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Human IGF1R with inhibitor 54
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other IGF1R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.1 M HEPES pH 7.5-8.5, 9-12 % PEG3350, 5 mM CoCl2, 5 mM CdCl2, 5 mM MgCl2, and 5 mM NiCl2
Crystal Properties Matthews coefficient Solvent content 2.34 47.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.35 α = 90 b = 69.35 β = 90 c = 142.85 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.999 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 71.43 98.6 0.24 12 12.2 10559
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.66 1.81
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.652 62.387 10295 486 96.161 0.24 0.2364 0.2373 0.3086 0.2974 41.529
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.537 2.537 -5.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.803 r_dihedral_angle_4_deg 22.719 r_dihedral_angle_3_deg 21.638 r_dihedral_angle_1_deg 7.987 r_lrange_it 2.897 r_lrange_other 2.861 r_angle_refined_deg 1.616 r_angle_other_deg 1.215 r_mcangle_it 1.194 r_mcangle_other 1.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.803 r_dihedral_angle_4_deg 22.719 r_dihedral_angle_3_deg 21.638 r_dihedral_angle_1_deg 7.987 r_lrange_it 2.897 r_lrange_other 2.861 r_angle_refined_deg 1.616 r_angle_other_deg 1.215 r_mcangle_it 1.194 r_mcangle_other 1.193 r_scangle_it 1.044 r_scangle_other 1.043 r_mcbond_it 0.655 r_mcbond_other 0.655 r_scbond_it 0.579 r_scbond_other 0.579 r_symmetry_nbd_refined 0.256 r_nbd_other 0.25 r_nbd_refined 0.214 r_symmetry_nbd_other 0.191 r_symmetry_xyhbond_nbd_refined 0.191 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.147 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_symmetry_xyhbond_nbd_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2213 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing