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Human IGF1R with inhibitor 6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other IGF1R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.1 M Bis-Tris, 0.3 M MgCl2, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.15 42.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.586 α = 90 b = 103.948 β = 100.17 c = 191.816 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99997 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.057 71.103 99.6 0.13 9.3 3.4 47077
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.057 3.067 0.54
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.06 63.474 46928 2372 99.616 0.193 0.1911 0.1949 0.2352 0.236 55.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.378 -1.03 -2.031 -3.737
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.876 r_dihedral_angle_3_deg 19.882 r_dihedral_angle_4_deg 15.8 r_lrange_it 12.383 r_lrange_other 12.382 r_scangle_it 8.932 r_scangle_other 8.932 r_mcangle_other 8.034 r_mcangle_it 8.033 r_dihedral_angle_1_deg 7.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.876 r_dihedral_angle_3_deg 19.882 r_dihedral_angle_4_deg 15.8 r_lrange_it 12.383 r_lrange_other 12.382 r_scangle_it 8.932 r_scangle_other 8.932 r_mcangle_other 8.034 r_mcangle_it 8.033 r_dihedral_angle_1_deg 7.004 r_scbond_it 5.454 r_scbond_other 5.454 r_mcbond_it 4.976 r_mcbond_other 4.972 r_angle_refined_deg 1.445 r_angle_other_deg 1.186 r_symmetry_xyhbond_nbd_refined 0.598 r_symmetry_nbd_refined 0.542 r_nbd_other 0.439 r_xyhbond_nbd_other 0.395 r_nbd_refined 0.198 r_symmetry_xyhbond_nbd_other 0.196 r_xyhbond_nbd_refined 0.192 r_symmetry_nbd_other 0.18 r_nbtor_refined 0.169 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.058 r_ncsr_local_group_1 0.041 r_ncsr_local_group_6 0.04 r_ncsr_local_group_3 0.038 r_ncsr_local_group_2 0.037 r_ncsr_local_group_7 0.037 r_ncsr_local_group_4 0.036 r_ncsr_local_group_5 0.035 r_ncsr_local_group_15 0.029 r_ncsr_local_group_26 0.027 r_ncsr_local_group_16 0.026 r_ncsr_local_group_17 0.026 r_ncsr_local_group_20 0.026 r_ncsr_local_group_27 0.026 r_ncsr_local_group_10 0.025 r_ncsr_local_group_24 0.025 r_ncsr_local_group_8 0.024 r_ncsr_local_group_19 0.024 r_ncsr_local_group_12 0.023 r_ncsr_local_group_14 0.023 r_ncsr_local_group_18 0.023 r_ncsr_local_group_28 0.023 r_ncsr_local_group_11 0.022 r_ncsr_local_group_21 0.022 r_ncsr_local_group_9 0.021 r_ncsr_local_group_13 0.021 r_ncsr_local_group_22 0.021 r_ncsr_local_group_23 0.019 r_ncsr_local_group_25 0.017 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18398 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 288
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing