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ChiLob 7/4 H2 HC-T219C/C224S Kappa LC-E123C/C214S F(ab')2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TKE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 294.15 0.1M TRIS, 15% PEG 4000, 0.2M (NH4)2SO4 2 VAPOR DIFFUSION, SITTING DROP 8 294.15 0.1M TRIS, 25% PEG 4000, 15% glycerol
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.167 α = 90 b = 148.167 β = 90 c = 45.295 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2022-04-13 M SINGLE WAVELENGTH 2 2 x-ray 45 PIXEL DECTRIS PILATUS 12M 2022-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.9677 ESRF MASSIF-3 2 SYNCHROTRON DIAMOND BEAMLINE I23 2.75 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 74.193 98.8 0.129 0.149 0.075 0.995 10.1 7.1 16178
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.67 2.8 97.1 1.725 1.995 0.986 0.384 0.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.671 74.193 16177 798 98.532 0.244 0.2422 0.2825 0.2602 74.386
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.787 1.393 2.787 -9.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.849 r_dihedral_angle_6_deg 13.535 r_dihedral_angle_1_deg 8.475 r_dihedral_angle_2_deg 7.159 r_lrange_it 4.227 r_lrange_other 4.226 r_mcangle_it 2.185 r_mcangle_other 2.185 r_scangle_it 2.161 r_scangle_other 2.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.849 r_dihedral_angle_6_deg 13.535 r_dihedral_angle_1_deg 8.475 r_dihedral_angle_2_deg 7.159 r_lrange_it 4.227 r_lrange_other 4.226 r_mcangle_it 2.185 r_mcangle_other 2.185 r_scangle_it 2.161 r_scangle_other 2.115 r_scbond_it 1.388 r_scbond_other 1.356 r_mcbond_it 1.26 r_mcbond_other 1.259 r_angle_refined_deg 1.167 r_symmetry_xyhbond_nbd_refined 0.705 r_angle_other_deg 0.391 r_symmetry_nbd_refined 0.263 r_nbd_refined 0.202 r_symmetry_nbd_other 0.201 r_nbd_other 0.183 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.155 r_symmetry_nbtor_other 0.085 r_symmetry_xyhbond_nbd_other 0.064 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3284 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement MxCuBE data collection XDS data reduction XSCALE data scaling MOLREP phasing Coot model building xia2 data reduction