8PII

VHH Z70 mutant 3 in interaction with PHF6 Tau peptide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52931.5M ammonium sulfate, 4.5% isopropanol, 15% glycerol
Crystal Properties
Matthews coefficientSolvent content
3.0960.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 135.435α = 90
b = 135.435β = 90
c = 35.425γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2023-06-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 20.9786SOLEILPROXIMA 2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3544.331000.2030.2080.0450.99918.838.78432
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.352.432.2272.2810.490.94740.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.3544.33841839899.9640.2030.20030.263242.058
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.1190.5591.119-3.629
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.377
r_dihedral_angle_3_deg15.164
r_lrange_it10.04
r_lrange_other10.039
r_scangle_it7.817
r_scangle_other7.812
r_dihedral_angle_2_deg7.302
r_dihedral_angle_1_deg7.282
r_mcangle_it6.451
r_mcangle_other6.448
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.377
r_dihedral_angle_3_deg15.164
r_lrange_it10.04
r_lrange_other10.039
r_scangle_it7.817
r_scangle_other7.812
r_dihedral_angle_2_deg7.302
r_dihedral_angle_1_deg7.282
r_mcangle_it6.451
r_mcangle_other6.448
r_scbond_it5.25
r_scbond_other5.245
r_mcbond_other4.284
r_mcbond_it4.279
r_angle_refined_deg1.39
r_angle_other_deg0.499
r_symmetry_nbd_refined0.207
r_nbd_refined0.199
r_symmetry_nbd_other0.197
r_xyhbond_nbd_refined0.195
r_nbtor_refined0.19
r_nbd_other0.169
r_symmetry_nbtor_other0.087
r_chiral_restr0.069
r_symmetry_xyhbond_nbd_refined0.067
r_bond_refined_d0.007
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms916
Nucleic Acid Atoms
Solvent Atoms30
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
REFMACrefinement
Aimlessdata scaling
XDSdata reduction
Cootmodel building
MOLREPphasing