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Crystal structure of p63-p73 heterotetramer (tetramerisation domain) in complex with darpin 1810 F11
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FP7 experimental model PDB 5HOB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293.15 0.2M ammonium acetate, 25% PEG3350, 0.1M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.21 44.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.024 α = 90 b = 60.312 β = 100.26 c = 53.576 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 48.73 96.7 0.049 0.063 0.031 0.997 12.2 4 25297
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.82 0.392 0.484 0.241 0.899 2.1 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.76 48.73 24099 1197 96.44 0.17184 0.16991 0.1822 0.21012 0.2193 RANDOM 34.202
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 -0.11 0.96 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.46 r_dihedral_angle_4_deg 15.37 r_dihedral_angle_3_deg 14.462 r_long_range_B_refined 6.698 r_long_range_B_other 6.696 r_dihedral_angle_1_deg 6.483 r_scangle_other 4.374 r_mcangle_other 2.947 r_mcangle_it 2.946 r_scbond_it 2.784
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.46 r_dihedral_angle_4_deg 15.37 r_dihedral_angle_3_deg 14.462 r_long_range_B_refined 6.698 r_long_range_B_other 6.696 r_dihedral_angle_1_deg 6.483 r_scangle_other 4.374 r_mcangle_other 2.947 r_mcangle_it 2.946 r_scbond_it 2.784 r_scbond_other 2.782 r_mcbond_it 1.88 r_mcbond_other 1.874 r_angle_refined_deg 1.47 r_angle_other_deg 1.432 r_chiral_restr 0.094 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2047 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing