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Cytochrome bc1 complex (Bos taurus)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FO2
Sample Cytochrome bc1 complex (bos taurus)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blot time of 4s with blot force of -3
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 140138 Reported Resolution (Å) 3 Resolution Method FSC 0.143 CUT-OFF Other Details FSC calculated in PDB server. Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (6FO2) Refinement Space Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value 96.9 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2750 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 85000 Calibrated Magnification 85000 Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.0.0 IMAGE ACQUISITION EPU 9.03 CTF CORRECTION cryoSPARC 4.0.0 MODEL FITTING PHENIX 1.20.1 INITIAL EULER ASSIGNMENT cryoSPARC 4.0.0 FINAL EULER ASSIGNMENT cryoSPARC 4.0.0 CLASSIFICATION cryoSPARC 4.0.0 RECONSTRUCTION cryoSPARC 4.0.0 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION CryoSPARC's own CTF correction 154469