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Complex of human ASCT2 with Syncytin-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6MPB in silico model AlphaFold M5A8F1
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 3.9314 f_angle_d 0.6224 f_chiral_restr 0.0421 f_plane_restr 0.0043 f_bond_d 0.0027
Sample Complex of ASCT2 with Synctin-1 Sample Components Alanine Serine Cysteine Transporter 2 Syncytin-1
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 136195 Reported Resolution (Å) 2.62 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (6MPB) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value 60.1 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 53.4
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 400 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU 2 CTF CORRECTION cryoSPARC 3.3 MODEL FITTING Coot 0.9.8.3 MODEL FITTING UCSF Chimera 1.16 MODEL REFINEMENT PHENIX 1.20.1_4487 INITIAL EULER ASSIGNMENT cryoSPARC 3.3 RECONSTRUCTION cryoSPARC 3.3
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 4018074