8OMS

X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure B)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7	293	0.8 M succinic acid at pH 7.0

Crystal Properties
Matthews coefficient	Solvent content
1.97	37.67

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.59	α = 90
b = 77.59	β = 90
c = 37.58	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2021-11-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	1.00	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.08	55.26	99.4	0.999	28.8	17.6		46747

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.08	1.22			0.867

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.1	38.803	46747	2374	99.278	0.146	0.1444	0.167	15.69

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.062			-0.062		0.124

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.908
r_dihedral_angle_4_deg	17.386
r_dihedral_angle_3_deg	14.6
r_dihedral_angle_1_deg	6.497
r_rigid_bond_restr	6.479
r_scangle_other	3.624
r_scangle_it	3.618
r_scbond_it	3.39
r_scbond_other	3.384
r_lrange_it	3.354
r_lrange_other	3.118
r_angle_refined_deg	2.691
r_mcangle_it	1.914
r_mcangle_other	1.913
r_angle_other_deg	1.767
r_mcbond_it	1.516
r_mcbond_other	1.515
r_xyhbond_nbd_refined	0.3
r_symmetry_xyhbond_nbd_refined	0.282
r_nbd_refined	0.249
r_nbd_other	0.229
r_symmetry_nbd_other	0.2
r_nbtor_refined	0.186
r_symmetry_nbd_refined	0.178
r_chiral_restr	0.143
r_symmetry_nbtor_other	0.096
r_symmetry_xyhbond_nbd_other	0.058
r_bond_refined_d	0.021
r_gen_planes_refined	0.013
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	161
Heterogen Atoms	25

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing