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Carbonic Anhydrase 2 in Complex with Steriod_Sulphamoyl AKI_13
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YZR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.08 40.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.15 α = 90 b = 41.34 β = 104.29 c = 72.14 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K 2021-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.45187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 50 94.9 0.03 0.034 0.9990000000000001 18.71 2.9 60710
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.27 1.3 0.152 0.212 0.943
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.27 35.58 57674 3036 94.92 0.13755 0.13594 0.16888 0.1914 RANDOM 16.484
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.01 -0.56 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.375 r_dihedral_angle_4_deg 22.007 r_dihedral_angle_3_deg 11.993 r_dihedral_angle_1_deg 7.355 r_long_range_B_refined 2.712 r_long_range_B_other 2.415 r_scangle_other 2.076 r_scbond_it 1.736 r_scbond_other 1.735 r_mcangle_it 1.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.375 r_dihedral_angle_4_deg 22.007 r_dihedral_angle_3_deg 11.993 r_dihedral_angle_1_deg 7.355 r_long_range_B_refined 2.712 r_long_range_B_other 2.415 r_scangle_other 2.076 r_scbond_it 1.736 r_scbond_other 1.735 r_mcangle_it 1.59 r_mcangle_other 1.59 r_angle_refined_deg 1.537 r_angle_other_deg 1.436 r_rigid_bond_restr 1.334 r_mcbond_other 1.311 r_mcbond_it 1.309 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2053 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling XDS data reduction MOLREP phasing