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mercuric reductase,GbsMerA, - FAD bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other homologue
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 10% w/v PEG 4000, 20% v/v glycerol, 0.12M of ethylene glycol, 0.1M bicine/Trizma pH8.5
Crystal Properties Matthews coefficient Solvent content 3.29 62.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.33 α = 90 b = 102.33 β = 90 c = 108.7 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2022-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.9794 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.39 29.57 99 1 27.8 20.1 26169
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.39 2.48 0.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.39 29.57 26169 1295 98.676 0.212 0.209 0.2125 0.2711 0.2665 53.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.006 0.003 0.006 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.447 r_dihedral_angle_4_deg 19.507 r_dihedral_angle_3_deg 17.323 r_dihedral_angle_1_deg 7.915 r_lrange_it 7.856 r_lrange_other 7.855 r_scangle_it 6.171 r_scangle_other 6.169 r_mcangle_it 5.617 r_mcangle_other 5.617
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.447 r_dihedral_angle_4_deg 19.507 r_dihedral_angle_3_deg 17.323 r_dihedral_angle_1_deg 7.915 r_lrange_it 7.856 r_lrange_other 7.855 r_scangle_it 6.171 r_scangle_other 6.169 r_mcangle_it 5.617 r_mcangle_other 5.617 r_scbond_other 4.185 r_scbond_it 4.184 r_mcbond_it 4.139 r_mcbond_other 4.134 r_angle_refined_deg 1.573 r_angle_other_deg 1.171 r_nbd_other 0.237 r_nbd_refined 0.207 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.167 r_xyhbond_nbd_refined 0.152 r_symmetry_nbd_refined 0.125 r_symmetry_xyhbond_nbd_other 0.087 r_symmetry_nbtor_other 0.078 r_symmetry_xyhbond_nbd_refined 0.069 r_chiral_restr 0.06 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3448 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing