8IB0 | pdb_00008ib0

The amyloid structure of mouse RIPK1 RHIM-containing domain by solid-state NMR

SOLID-STATE NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D DARR 50ms mixing	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 atm	303	Bruker 3.2 mm HCN E-free probe 700
5	2D NCACX	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 atm	303	Bruker 3.2 mm HCN E-free probe 700
4	2D NCOCX	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 atm	303	Bruker 3.2 mm HCN E-free probe 700
3	2D NH	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 Pa	279	Bruker 0.7 mm HCN probe 700
2	2D CH	1 mg/L [U-100% 13C; U-100% 15N; 2H] mouse RIPK1	100% H2O	0 mM	7.5	1 Pa	279	Bruker 0.7 mm HCN probe 700
7	2D zTEDOR 6.4ms mixing	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 atm	303	Bruker 3.2 mm HCN E-free probe 700
6	3D CONH	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 Pa	279	Bruker 0.7 mm HCN probe 700
8	3D CANH	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 Pa	279	Bruker 0.7 mm HCN probe 700
9	3D COcaNH	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 Pa	279	Bruker 0.7 mm HCN probe 700
10	2D DARR 50ms mixing	1 mg/L [2-13C-glucose, U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 atm	303	Bruker 3.2 mm HCN E-free probe 700
11	2D DARR 500ms mixing	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 atm	303	Bruker 3.2 mm HCN E-free probe 700
12	2D DARR 400ms mixing	1 mg/L [2-13C-glucose, U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 atm	303	Bruker 3.2 mm HCN E-free probe 700
13	2D CHHC	1 mg/mL [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 atm	303	Bruker 3.2 mm HCN E-free probe 700
14	2D NHHC	1 g/L [U-100% 13C; U-100% 15N] mouse RIPK1	100% H2O	0 mM	7.5	1 Pa	271	Bruker 3.2 mm HCN E-free probe 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	3.2 mm HCN E-free probe	700
2	Bruker	0.7 mm HCN probe	700

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	196
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	data analysis	Sparky		Goddard
3	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
4	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.