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The open state of RGLG2-VWA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 100 mM Tris-HCl, pH 7.5, 200 mM ammonium sulfate, 20% polyethylene glycol 4000
Crystal Properties Matthews coefficient Solvent content 3.58 65.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 244.41 α = 90 b = 244.41 β = 90 c = 63.65 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2018-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AichiSR BEAMLINE BL2S1 0.9789 AichiSR BL2S1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.81 49.81 99.91 0.996 11 10.43 103535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.81 2.86 0.734
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.81 49.81 98418 5115 99.91 0.18468 0.18343 0.1939 0.20816 0.2126 RANDOM 66.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.54 -1.27 -2.54 8.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.547 r_dihedral_angle_4_deg 18.744 r_dihedral_angle_3_deg 17.211 r_long_range_B_refined 14.233 r_long_range_B_other 14.217 r_scangle_other 9.727 r_mcangle_it 8.964 r_mcangle_other 8.964 r_dihedral_angle_1_deg 7.476 r_scbond_it 6.416
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.547 r_dihedral_angle_4_deg 18.744 r_dihedral_angle_3_deg 17.211 r_long_range_B_refined 14.233 r_long_range_B_other 14.217 r_scangle_other 9.727 r_mcangle_it 8.964 r_mcangle_other 8.964 r_dihedral_angle_1_deg 7.476 r_scbond_it 6.416 r_scbond_other 6.323 r_mcbond_it 6.021 r_mcbond_other 5.999 r_angle_refined_deg 1.479 r_angle_other_deg 1.276 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20433 Nucleic Acid Atoms Solvent Atoms 477 Heterogen Atoms 136
Software Software Software Name Purpose PHENIX refinement PHENIX model building Aimless data scaling PHENIX phasing