8HMG | pdb_00008hmg

The open state of RGLG2-VWA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	MIF4G	e8hmgI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
H	MIF4G	e8hmgH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
G	MIF4G	e8hmgG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
F	MIF4G	e8hmgF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
E	MIF4G	e8hmgE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
D	MIF4G	e8hmgD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
C	MIF4G	e8hmgC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
B	MIF4G	e8hmgB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF4G	ECOD (v295)
A	WD40	e8hmgA01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: WD40	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I	PF07002	Copine (Copine)	Copine	This family represents a conserved region approximately 220 residues long within eukaryotic copines. Copines are Ca(2+)-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell ...	This family represents a conserved region approximately 220 residues long within eukaryotic copines. Copines are Ca(2+)-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I	E3 ubiquitin-protein ligase RGLG2	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding ubiquitin-like protein ligase activity ubiquitin protein ligase activity	regulation of biological process response to stimulus negative regulation of response to stimulus biological regulation negative regulation of biological process response to oxygen-containing compound response to water response to acid chemical regulation of response to water deprivation regulation of response to stimulus regulation of response to stress response to stress response to chemical negative regulation of response to water deprivation regulation of biological process response to stimulus negative regulation of response to stimulus biological regulation negative regulation of biological process response to oxygen-containing compound response to water response to acid chemical regulation of response to water deprivation regulation of response to stimulus regulation of response to stress response to stress response to chemical negative regulation of response to water deprivation response to abiotic stimulus response to water deprivation protein polyubiquitination primary metabolic process protein K63-linked ubiquitination protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal amine metabolic process cytokinin metabolic process regulation of hormone levels regulation of biological quality hormone metabolic process cellular response to stimulus regulation of cellular process response to lipid abscisic acid-activated signaling pathway signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus cellular response to abscisic acid stimulus response to abscisic acid response to alcohol response to endogenous stimulus cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to alcohol cellular response to lipid auxin metabolic process	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR052079	E3 ubiquitin-ligases/Copine domain-containing protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR045317	E3 ubiquitin-protein ligase RGLG1/2, RING finger	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR002035	von Willebrand factor, type A	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR010734	Copine, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR001841	Zinc finger, RING-type	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.