☰ Navigation Tabs
Crystal structure of the coiled-coil domain of TRIM56
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7UG2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7.5 298 10% Glycerol, 5% PEG3000, 30%PEG400, 0.1M Hepes pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.8 67.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.679 α = 90 b = 136.679 β = 90 c = 65.27 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9791 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 48 99.4 0.999 9.1 3.7 14908
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95 0.678
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7UG2 2.8 44.655 14904 753 99.228 0.222 0.2194 0.2194 0.2644 0.2644 102.779
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.489 1.489 -2.979
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 22.356 r_dihedral_angle_3_deg 19.457 r_scangle_it 18.694 r_mcangle_it 16.135 r_scbond_it 13.473 r_dihedral_angle_6_deg 12.604 r_mcbond_it 11.286 r_dihedral_angle_2_deg 7.619 r_dihedral_angle_1_deg 6.562 r_angle_refined_deg 1.967
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 22.356 r_dihedral_angle_3_deg 19.457 r_scangle_it 18.694 r_mcangle_it 16.135 r_scbond_it 13.473 r_dihedral_angle_6_deg 12.604 r_mcbond_it 11.286 r_dihedral_angle_2_deg 7.619 r_dihedral_angle_1_deg 6.562 r_angle_refined_deg 1.967 r_symmetry_nbd_refined 0.307 r_nbtor_refined 0.301 r_symmetry_xyhbond_nbd_refined 0.287 r_nbd_refined 0.254 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.139 r_gen_planes_refined 0.008 r_bond_refined_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2410 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHENIX phasing