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Lysozyme Anomalous Dataset at 260 K and 7.1 keV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
Crystal Properties Matthews coefficient Solvent content 1.95 36.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.502 α = 90 b = 77.502 β = 90 c = 37.177 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 260 PIXEL DECTRIS EIGER X 16M 2020-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 1.7462 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 38.781 99.9 0.048 0.019 0.998 40.2 11.9 9386 21.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 87.9 0.089 0.03 0.997 19.7 9.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.9 38.781 9353 488 99.787 0.132 0.1302 0.1452 0.1725 0.1804 17.462
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.078 0.078 -0.157
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.348 r_dihedral_angle_3_deg 14.463 r_dihedral_angle_2_deg 7.996 r_lrange_it 7.501 r_lrange_other 7.415 r_dihedral_angle_1_deg 6.664 r_scangle_it 5.084 r_scangle_other 5.081 r_scbond_it 3.514 r_scbond_other 3.511
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.348 r_dihedral_angle_3_deg 14.463 r_dihedral_angle_2_deg 7.996 r_lrange_it 7.501 r_lrange_other 7.415 r_dihedral_angle_1_deg 6.664 r_scangle_it 5.084 r_scangle_other 5.081 r_scbond_it 3.514 r_scbond_other 3.511 r_mcangle_other 2.239 r_mcangle_it 2.229 r_mcbond_other 1.642 r_mcbond_it 1.641 r_angle_refined_deg 1.57 r_angle_other_deg 0.562 r_xyhbond_nbd_refined 0.348 r_symmetry_xyhbond_nbd_refined 0.255 r_symmetry_nbd_refined 0.247 r_nbd_refined 0.243 r_nbd_other 0.226 r_symmetry_nbd_other 0.201 r_nbtor_refined 0.182 r_metal_ion_refined 0.104 r_chiral_restr 0.082 r_symmetry_nbtor_other 0.078 r_symmetry_xyhbond_nbd_other 0.035 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXDE phasing