☰ Navigation Tabs
Co-crystal structure of PERK with compound 11
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4X7J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 12% PEG3350, 4% tacsimate pH7.0
Crystal Properties Matthews coefficient Solvent content 3.7 66.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.728 α = 90 b = 126.728 β = 90 c = 58.769 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.86 55 100 0.126 8 9.6 12802
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.86 2.93 0.696
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4X7J 2.86 54.875 12763 648 99.517 0.241 0.239 0.2777 0.2772 0.3115 78.336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.05 -3.525 -7.05 22.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.019 r_dihedral_angle_4_deg 18.21 r_dihedral_angle_3_deg 16.91 r_lrange_it 9.968 r_lrange_other 9.967 r_mcangle_other 7.165 r_mcangle_it 7.164 r_dihedral_angle_1_deg 6.95 r_scangle_it 5.826 r_scangle_other 5.824
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.019 r_dihedral_angle_4_deg 18.21 r_dihedral_angle_3_deg 16.91 r_lrange_it 9.968 r_lrange_other 9.967 r_mcangle_other 7.165 r_mcangle_it 7.164 r_dihedral_angle_1_deg 6.95 r_scangle_it 5.826 r_scangle_other 5.824 r_mcbond_it 4.341 r_mcbond_other 4.339 r_scbond_it 3.386 r_scbond_other 3.385 r_angle_refined_deg 1.303 r_angle_other_deg 1.04 r_nbd_refined 0.208 r_symmetry_nbd_other 0.17 r_nbtor_refined 0.164 r_symmetry_xyhbond_nbd_refined 0.149 r_nbd_other 0.138 r_xyhbond_nbd_refined 0.129 r_symmetry_nbd_refined 0.075 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.047 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2090 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing