8EDH

Identification of a class of WNK isoform-specific inhibitors through high-throughput screening


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82890.1M Sodium Malonate pH 5.0 and 12% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.7856

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.976α = 90
b = 112.473β = 100.268
c = 66.642γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2019-03-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97925APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.1127.8860.070.040.958.44.81335744.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.114.898.40.44.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5FPQ3.11126.48510857104681.3010.1960.18570.291110%69.718
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.2390.213-1.2590.884
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg21.829
r_lrange_it19.552
r_dihedral_angle_2_deg15.511
r_dihedral_angle_6_deg14.77
r_scangle_it10.264
r_mcangle_it9.45
r_dihedral_angle_1_deg6.757
r_scbond_it6.447
r_mcbond_it5.67
r_angle_refined_deg1.391
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg21.829
r_lrange_it19.552
r_dihedral_angle_2_deg15.511
r_dihedral_angle_6_deg14.77
r_scangle_it10.264
r_mcangle_it9.45
r_dihedral_angle_1_deg6.757
r_scbond_it6.447
r_mcbond_it5.67
r_angle_refined_deg1.391
r_nbtor_refined0.314
r_symmetry_nbd_refined0.253
r_nbd_refined0.245
r_symmetry_xyhbond_nbd_refined0.202
r_ncsr_local_group_10.173
r_xyhbond_nbd_refined0.165
r_chiral_restr0.097
r_bond_refined_d0.005
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4126
Nucleic Acid Atoms
Solvent Atoms158
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing