☰ Navigation Tabs
Identification of a class of WNK isoform-specific inhibitors through high-throughput screening
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FPQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 289 0.1M Sodium Malonate pH 5.0 and 12% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.78 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.976 α = 90 b = 112.473 β = 100.268 c = 66.642 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2019-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97925 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.11 27.8 86 0.07 0.04 0.95 8.4 4.8 13357 44.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.11 4.8 98.4 0.4 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5FPQ 3.111 26.485 10857 1046 81.301 0.196 0.1857 0.1854 0.2911 0.291 10% 69.718
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.239 0.213 -1.259 0.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.829 r_lrange_it 19.552 r_dihedral_angle_2_deg 15.511 r_dihedral_angle_6_deg 14.77 r_scangle_it 10.264 r_mcangle_it 9.45 r_dihedral_angle_1_deg 6.757 r_scbond_it 6.447 r_mcbond_it 5.67 r_angle_refined_deg 1.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.829 r_lrange_it 19.552 r_dihedral_angle_2_deg 15.511 r_dihedral_angle_6_deg 14.77 r_scangle_it 10.264 r_mcangle_it 9.45 r_dihedral_angle_1_deg 6.757 r_scbond_it 6.447 r_mcbond_it 5.67 r_angle_refined_deg 1.391 r_nbtor_refined 0.314 r_symmetry_nbd_refined 0.253 r_nbd_refined 0.245 r_symmetry_xyhbond_nbd_refined 0.202 r_ncsr_local_group_1 0.173 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.097 r_bond_refined_d 0.005 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4126 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing