X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.527720% w/v PEG10K, 0.1M Sodium citrate tribasic dihydrate pH 5.5, 1M Lithium sulfate monohydrate
Crystal Properties
Matthews coefficientSolvent content
2.6353.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.16α = 90
b = 196.331β = 90
c = 63.112γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2013-03-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.982APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.759898.50.01161.228636
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.752.910.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3TO42.7545.23828062142697.9170.2280.22430.300634.662
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.258-0.7590.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.863
r_dihedral_angle_3_deg22.666
r_dihedral_angle_4_deg18.879
r_dihedral_angle_1_deg10.361
r_lrange_it5.313
r_lrange_other5.313
r_mcangle_it3.265
r_mcangle_other3.265
r_scangle_other2.715
r_scangle_it2.714
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.863
r_dihedral_angle_3_deg22.666
r_dihedral_angle_4_deg18.879
r_dihedral_angle_1_deg10.361
r_lrange_it5.313
r_lrange_other5.313
r_mcangle_it3.265
r_mcangle_other3.265
r_scangle_other2.715
r_scangle_it2.714
r_angle_refined_deg2.011
r_mcbond_it1.815
r_mcbond_other1.815
r_scbond_it1.548
r_scbond_other1.547
r_angle_other_deg1.326
r_nbd_other0.236
r_nbd_refined0.227
r_symmetry_nbd_other0.217
r_symmetry_xyhbond_nbd_refined0.198
r_xyhbond_nbd_refined0.189
r_nbtor_refined0.181
r_symmetry_nbd_refined0.178
r_symmetry_xyhbond_nbd_other0.113
r_symmetry_nbtor_other0.091
r_chiral_restr0.089
r_bond_refined_d0.012
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7138
Nucleic Acid Atoms
Solvent Atoms14
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing