NMR Experiment |
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
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1 | 2D 1H-1H NOESY | 0.98 mM RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 900 |
3 | 2D 1H-13C HSQC | 0.2 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 95% H2O/5% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 800 |
2 | 2D 1H-13C HSQC | 0.2 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS, 20 mg/mL Pf1 phage | 95% H2O/5% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 800 |
4 | 2D 1H-15N HSQC | 0.2 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 95% H2O/5% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 800 |
5 | 2D 1H-15N HSQC | 0.2 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS, 20 mg/mL Pf1 phage | 95% H2O/5% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 800 |
6 | 3D qHCP | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 600 |
7 | 2D qHCP | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 600 |
8 | 2D P-FIDS | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 600 |
9 | 3D HCC-TOCSY-CCH-E.COSY | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 900 |
10 | 2D HNN-COSY | 0.64 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 95% H2O/5% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 600 |
11 | 2D gamma HCCH | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE III HD 700 |
12 | 2D gamma HCNCH | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE II 600 |
13 | 2D gamma HCP | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 600 |
14 | 2D 1H-13C HSQC | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 600 |
15 | 2D 1H-15N HSQC | 0.64 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 95% H2O/5% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 600 |
16 | 2D HCN | 0.64 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 95% H2O/5% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE III HD 700 |
17 | 3D forward directed HCCH-TOCSY | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 900 |
18 | 3D HCP | 1.26 mM [U-13C; U-15N]-Ade,-Cyt, -Gua, -Ura RNA hairpin with CUUG tetraloop, 10 mM potassium phosphate, 1 mM EDTA, 50 uM DSS | 100% D2O | 13 mM | 6.4 | ambient mbar | 308 | Bruker AVANCE 600 |