8BY4

Crystal structure of Odorant Binding Protein 1 from Aedes albopictus (Asian tiger mosquito)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52930.1.6M tri-sodium citrate
Crystal Properties
Matthews coefficientSolvent content
4.371.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.337α = 90
b = 81.337β = 90
c = 63.844γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 XE 9M2019-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9159DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1247.3599.960.99915.6216836
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.07299.820.943.652

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6OG0247.351600282999.950.165590.1640.19749RANDOM40.683
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.260.130.26-0.83
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.08
r_dihedral_angle_4_deg18.456
r_scangle_other15.83
r_scbond_it15.362
r_scbond_other15.264
r_long_range_B_other15.26
r_long_range_B_refined15.196
r_dihedral_angle_3_deg12.767
r_mcangle_other7.986
r_mcangle_it7.979
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.08
r_dihedral_angle_4_deg18.456
r_scangle_other15.83
r_scbond_it15.362
r_scbond_other15.264
r_long_range_B_other15.26
r_long_range_B_refined15.196
r_dihedral_angle_3_deg12.767
r_mcangle_other7.986
r_mcangle_it7.979
r_mcbond_it7.675
r_mcbond_other7.443
r_dihedral_angle_1_deg4.555
r_angle_refined_deg1.29
r_angle_other_deg1.165
r_chiral_restr0.077
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms992
Nucleic Acid Atoms
Solvent Atoms58
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
MOLREPphasing