X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.2 M sodium acetate trihydrate, 0.1 M Bis-tris propane, pH 7.5, 20% w/v PEG 3350
Crystal Properties
Matthews coefficientSolvent content
3.0659.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.804α = 90
b = 75.016β = 90
c = 125.771γ = 90
Symmetry
Space GroupP 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 S 16M2021-03-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.81532DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7950.361000.99910.513.561413
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.791.820.351

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2B3P1.7950.358326305199.780.20180.200090.23442RANDOM42
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.871.74-0.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.969
r_dihedral_angle_4_deg15.969
r_dihedral_angle_3_deg14.53
r_dihedral_angle_1_deg7.812
r_long_range_B_refined6.823
r_long_range_B_other6.814
r_scangle_other3.833
r_mcangle_it2.705
r_mcangle_other2.704
r_scbond_it2.429
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.969
r_dihedral_angle_4_deg15.969
r_dihedral_angle_3_deg14.53
r_dihedral_angle_1_deg7.812
r_long_range_B_refined6.823
r_long_range_B_other6.814
r_scangle_other3.833
r_mcangle_it2.705
r_mcangle_other2.704
r_scbond_it2.429
r_scbond_other2.428
r_mcbond_it1.798
r_mcbond_other1.798
r_angle_refined_deg1.795
r_angle_other_deg1.311
r_chiral_restr0.082
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3679
Nucleic Acid Atoms
Solvent Atoms275
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata scaling
DIALSdata reduction
PHASERphasing