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The N288D mutant cytoplasmic PAS domain of Geobacillus thermodenitrificans histidine kinase CitA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.4M magnesium chloride, 0.1M Tris/HCl, pH 8.5, 20.5% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.29 46.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.166 α = 90 b = 49.295 β = 90 c = 92.199 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-12-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97957, 0.9800, 0.97188 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 43.509 92.1 0.038 20.96 3.12 12630
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 0.267
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 2.1 43.509 12630 640 92.203 0.197 0.1951 0.2033 0.2326 0.2385 42.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.255 -0.347 0.602
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.302 r_dihedral_angle_4_deg 16.077 r_dihedral_angle_3_deg 14.512 r_lrange_it 9.475 r_lrange_other 9.456 r_scangle_it 7.897 r_scangle_other 7.893 r_dihedral_angle_1_deg 6.95 r_scbond_it 5.329 r_scbond_other 5.325
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.302 r_dihedral_angle_4_deg 16.077 r_dihedral_angle_3_deg 14.512 r_lrange_it 9.475 r_lrange_other 9.456 r_scangle_it 7.897 r_scangle_other 7.893 r_dihedral_angle_1_deg 6.95 r_scbond_it 5.329 r_scbond_other 5.325 r_mcangle_other 4.91 r_mcangle_it 4.909 r_mcbond_it 3.716 r_mcbond_other 3.676 r_angle_refined_deg 1.614 r_angle_other_deg 1.324 r_symmetry_xyhbond_nbd_refined 0.257 r_nbd_refined 0.206 r_nbd_other 0.206 r_symmetry_nbd_other 0.185 r_nbtor_refined 0.15 r_xyhbond_nbd_refined 0.136 r_symmetry_nbd_refined 0.099 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.068 r_metal_ion_refined 0.042 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1594 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling SHELXDE phasing