8AVN

Mutant of Superoxide dismutase SodFM1 from CPR Parcubacteria Wolfebacteria

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293.15	200 mM sodium chloride, 100 mM sodium acetate pH 5.0 and 20 % w/v polyethylene glycol 6000.

Crystal Properties
Matthews coefficient	Solvent content
1.97	37.66

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 46.49	α = 90
b = 69.71	β = 100.24
c = 58.01	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2022-02-26	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I24	0.99987	Diamond	I24

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.65	45.79	98.7	0.999	6.5	6.5		43267

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.65	1.68			0.556	1.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1GV3	1.65	45.79	43245	2167	98.551	0.155	0.1521	0.22	29.887

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.536		-0.153	3.035		-1.355

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.742
r_dihedral_angle_3_deg	15.07
r_dihedral_angle_1_deg	6.328
r_dihedral_angle_2_deg	5.633
r_rigid_bond_restr	5.367
r_lrange_it	4.965
r_lrange_other	4.949
r_scangle_it	4.245
r_scangle_other	4.244
r_mcangle_other	3.584
r_mcangle_it	3.583
r_scbond_it	3.201
r_scbond_other	3.2
r_mcbond_it	2.68
r_mcbond_other	2.653
r_angle_refined_deg	1.659
r_angle_other_deg	0.555
r_symmetry_nbd_refined	0.253
r_nbd_other	0.239
r_nbd_refined	0.233
r_symmetry_nbd_other	0.198
r_nbtor_refined	0.192
r_xyhbond_nbd_refined	0.183
r_symmetry_xyhbond_nbd_refined	0.173
r_xyhbond_nbd_other	0.11
r_ncsr_local_group_1	0.084
r_chiral_restr	0.082
r_symmetry_nbtor_other	0.079
r_symmetry_xyhbond_nbd_other	0.031
r_bond_refined_d	0.011
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3300
Nucleic Acid Atoms
Solvent Atoms	193
Heterogen Atoms	2

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
XDS	data reduction
Aimless	data scaling
Coot	model building
BUCCANEER	model building
MolProbity	model building
PHASER	phasing