X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP289.151 M ammonium sulphate, 0.2 M sodium chloride, 9.55%(w/v) PEG 20.000, 0.1 M MES, at pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.3848.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.522α = 90
b = 91.522β = 90
c = 158.62γ = 120
Symmetry
Space GroupP 63 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray289.15PIXELDECTRIS PILATUS 6M2020-07-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.9198ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.745.81000.9932.1211.911391
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.830.55

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3WDG2.745.81138058199.7630.2020.19810.260546.431
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.532-0.766-1.5324.969
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.35
r_dihedral_angle_3_deg17.829
r_dihedral_angle_4_deg16.465
r_dihedral_angle_1_deg8.537
r_lrange_it8.198
r_lrange_other8.197
r_scangle_it6.311
r_scangle_other6.309
r_mcangle_other5.861
r_mcangle_it5.858
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.35
r_dihedral_angle_3_deg17.829
r_dihedral_angle_4_deg16.465
r_dihedral_angle_1_deg8.537
r_lrange_it8.198
r_lrange_other8.197
r_scangle_it6.311
r_scangle_other6.309
r_mcangle_other5.861
r_mcangle_it5.858
r_scbond_it4.062
r_scbond_other4.049
r_mcbond_it3.827
r_mcbond_other3.78
r_angle_refined_deg1.586
r_angle_other_deg1.21
r_nbd_other0.227
r_nbd_refined0.208
r_symmetry_nbd_other0.184
r_nbtor_refined0.177
r_xyhbond_nbd_refined0.158
r_symmetry_nbd_refined0.139
r_symmetry_xyhbond_nbd_refined0.105
r_symmetry_nbtor_other0.077
r_chiral_restr0.063
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2645
Nucleic Acid Atoms
Solvent Atoms17
Heterogen Atoms9

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing