8AGR

Crystal structure of DltE from L. plantarum, apo form

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	PEG MME 5K, Tris pH8.5, LiSO4, ethylene glycol

Crystal Properties
Matthews coefficient	Solvent content
2.35	47.77

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 60.874	α = 90
b = 95.719	β = 96.26
c = 68.013	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 2M		2018-04-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-2	0.8731	ESRF	ID23-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.86	47.86	99.9	0.12	6.4	4.5		64951

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.86	1.9			0.441	2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3WWX	1.86	47.796	64922	3142	99.826	0.168	0.1663	0.2027	14.051

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.013		0.008	0.006		0.005

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.061
r_dihedral_angle_3_deg	14.684
r_dihedral_angle_2_deg	8.798
r_dihedral_angle_1_deg	6.172
r_lrange_it	5.529
r_lrange_other	5.528
r_scangle_it	3.806
r_scangle_other	3.806
r_scbond_it	2.477
r_scbond_other	2.477
r_mcangle_other	1.889
r_mcangle_it	1.888
r_angle_refined_deg	1.353
r_mcbond_it	1.291
r_mcbond_other	1.287
r_angle_other_deg	0.712
r_nbd_other	0.267
r_symmetry_nbd_refined	0.241
r_nbd_refined	0.225
r_symmetry_nbd_other	0.192
r_nbtor_refined	0.18
r_symmetry_xyhbond_nbd_refined	0.165
r_xyhbond_nbd_refined	0.161
r_symmetry_nbtor_other	0.076
r_chiral_restr	0.067
r_symmetry_xyhbond_nbd_other	0.067
r_bond_other_d	0.031
r_xyhbond_nbd_other	0.016
r_bond_refined_d	0.008
r_gen_planes_refined	0.008
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5058
Nucleic Acid Atoms
Solvent Atoms	845
Heterogen Atoms	31

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing