8AGM

Limonene epoxide low pH soak of epoxide hydrolase from metagenomic source ch65

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH	6.5	291	Morpheus crystal screen condition C3, 40% v/v Glycerol; 20% w/v PEG 4000 . The crystal was soaked for two hours in cryoprotectant containing 1mM mixture of cis (1R,2S,4R) and trans (1S,2R,4R) isomers of (+)-limonene oxide at pH 4.5.

Crystal Properties
Matthews coefficient	Solvent content
2.32	47.08

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 95.985	α = 90
b = 47.416	β = 91.66
c = 142.814	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2018-10-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.9795	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.966	96.129	99.6	0.998	7.3	3.4		91956

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.966	2			0.322

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5ng7	1.966	96.129	91955	4467	99.594	0.233	0.2316	0.2704	63.288

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-5.799		-0.553	8.397		-2.561

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.337
r_dihedral_angle_4_deg	22
r_dihedral_angle_3_deg	16.069
r_lrange_it	10.003
r_scangle_it	8.892
r_scbond_it	6.749
r_mcangle_it	4.467
r_mcbond_it	3.455
r_dihedral_angle_1_deg	2.834
r_angle_refined_deg	1.635
r_nbtor_refined	0.285
r_nbd_refined	0.177
r_symmetry_nbd_refined	0.166
r_chiral_restr	0.115
r_ncsr_local_group_1	0.096
r_ncsr_local_group_4	0.093
r_ncsr_local_group_2	0.09
r_ncsr_local_group_6	0.09
r_ncsr_local_group_5	0.089
r_ncsr_local_group_3	0.085
r_symmetry_xyhbond_nbd_refined	0.065
r_xyhbond_nbd_refined	0.059
r_bond_refined_d	0.012
r_gen_planes_refined	0.009

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9549
Nucleic Acid Atoms
Solvent Atoms	231
Heterogen Atoms	100

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing
BUSTER	refinement
Coot	model building
PARROT	phasing