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p62-ZZ domain of the human sequestosome in complex with dusquetide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 14.4% PEG 8000, 0.08 M Na-cacodylate pH 6.5, 0.16 M Ca acetate. 200 nl 18 mg/ml p62-ZZ-dusquetide complex + 100 nl seed solution + 300 nl reservoir solution.
Crystal Properties Matthews coefficient Solvent content 2.03 39.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.07 α = 90 b = 25.15 β = 124.915 c = 77.53 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm focusing mirrors 2010-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 1.0403 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 98.5 0.085 10.9 3.2 10270
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.2 0.366 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.202 24.628 10264 491 98.892 0.181 0.1782 0.1839 0.243 0.2435 33.717
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9 1.283 -4.494 0.913
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.855 r_dihedral_angle_3_deg 14.724 r_dihedral_angle_1_deg 8.604 r_dihedral_angle_4_deg 7.608 r_lrange_it 5.157 r_lrange_other 5.125 r_mcangle_it 2.653 r_mcangle_other 2.653 r_scangle_it 2.142 r_scangle_other 2.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.855 r_dihedral_angle_3_deg 14.724 r_dihedral_angle_1_deg 8.604 r_dihedral_angle_4_deg 7.608 r_lrange_it 5.157 r_lrange_other 5.125 r_mcangle_it 2.653 r_mcangle_other 2.653 r_scangle_it 2.142 r_scangle_other 2.141 r_angle_refined_deg 1.858 r_mcbond_it 1.548 r_mcbond_other 1.545 r_angle_other_deg 1.294 r_scbond_it 1.285 r_scbond_other 1.284 r_symmetry_xyhbond_nbd_refined 0.199 r_symmetry_nbd_other 0.19 r_nbd_refined 0.188 r_xyhbond_nbd_refined 0.181 r_nbtor_refined 0.157 r_nbd_other 0.128 r_symmetry_nbd_refined 0.117 r_metal_ion_refined 0.099 r_chiral_restr 0.088 r_symmetry_nbtor_other 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1594 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling XSCALE data scaling SHELXDE phasing BUCCANEER phasing Coot model building