7LM2

HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 3C

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	12-14% PEG6000, 100 MM MES/NAOH, PH 5.75, 5 MM DTT

Crystal Properties
Matthews coefficient	Solvent content
2.7	53.4

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 91.284	α = 90
b = 109.308	β = 90
c = 142.579	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2013-11-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	0.99998	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Rrim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.79	86.75	100	0.058	0.066	5.5	8.3		36279

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Rrim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.79	3.01	99.9		0.589	0.673	1.3	8.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	THROUGHOUT	previously derived model	2.79	86.75	35462	739	99.97	0.2415	0.2405	0.2895	RANDOM	97.127

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.64			1.81		-2.45

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.314
r_dihedral_angle_4_deg	13.153
r_dihedral_angle_3_deg	12.816
r_dihedral_angle_1_deg	5.389
r_angle_other_deg	1.272
r_angle_refined_deg	1.042
r_nbd_refined	0.161
r_nbtor_refined	0.155
r_nbd_other	0.136
r_symmetry_hbond_refined	0.132
r_symmetry_vdw_other	0.108
r_symmetry_vdw_refined	0.093
r_xyhbond_nbd_refined	0.074
r_nbtor_other	0.068
r_chiral_restr	0.058
r_bond_refined_d	0.008
r_bond_other_d	0.002
r_gen_planes_refined	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9029
Nucleic Acid Atoms
Solvent Atoms	8
Heterogen Atoms	38

Software

Software
Software Name	Purpose
REFMAC	refinement
SCALA	data scaling
PDB_EXTRACT	data extraction