7ZUS

Crystal structure of ternary complex of Pol theta polymerase domain

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.9	285	15% (w/v) PEG 3350, 0.1 M Bis-Tris propane pH 8.9, 0.2 M sodium citrate tribasic dihydrate.

Crystal Properties
Matthews coefficient	Solvent content
2.7	54.4

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 288.81	α = 90
b = 172.91	β = 90.89
c = 58.75	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2016-04-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.97623	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.26	84.1	98.9	0.057	0.999	14.8	3.4		132903

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.26	2.32			0.551	1.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4X0Q	2.26	50.005	132891	6680	98.91	0.203	0.2008	0.2384	71.064

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.567		-0.989	-1.379		1.976

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.814
r_dihedral_angle_4_deg	18.435
r_dihedral_angle_3_deg	16.855
r_lrange_it	6.62
r_lrange_other	6.62
r_dihedral_angle_1_deg	6.453
r_scangle_other	4.336
r_scangle_it	4.335
r_mcangle_it	3.899
r_mcangle_other	3.899
r_scbond_it	2.772
r_scbond_other	2.772
r_mcbond_it	2.508
r_mcbond_other	2.508
r_angle_refined_deg	1.632
r_angle_other_deg	1.271
r_nbd_other	0.222
r_symmetry_xyhbond_nbd_refined	0.217
r_nbd_refined	0.198
r_symmetry_nbd_other	0.182
r_nbtor_refined	0.172
r_symmetry_xyhbond_nbd_other	0.17
r_symmetry_nbd_refined	0.159
r_xyhbond_nbd_refined	0.143
r_chiral_restr	0.098
r_symmetry_nbtor_other	0.081
r_ncsr_local_group_1	0.081
r_ncsr_local_group_7	0.079
r_ncsr_local_group_6	0.078
r_ncsr_local_group_2	0.077
r_ncsr_local_group_4	0.074
r_ncsr_local_group_3	0.067
r_ncsr_local_group_8	0.063
r_ncsr_local_group_5	0.062
r_ncsr_local_group_9	0.021
r_bond_refined_d	0.01
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	14717
Nucleic Acid Atoms	1764
Solvent Atoms	268
Heterogen Atoms	93

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing
Coot	model building