7ZQN
d(CGCGCG)2 Z-DNA AT 5400 BARS (540 MPa)
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | BATCH MODE | 6.9 | 298 | 10 mg in 20 % MPD solution (cacodylate buffer + 0.01 M MgCl2) |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.67 | 26.28 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 17.87 | α = 90 |
b = 30.9 | β = 90 |
c = 43.76 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 298 | CCD | ADSC QUANTUM 315r | 2007-06-22 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | ESRF BEAMLINE BM30A | 0.75003 | ESRF | BM30A |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Rpim I (All) | CC (Half) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||
1 | 1.41 | 25.1 | 77.4 | 0.118 | 0.047 | 0.99 | 7.8 | 5.8 | 3922 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Rpim I (All) | CC (Half) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||
1 | 1.41 | 1.44 | 75.1 | 0.189 | 0.179 | 0.97 | 3.1 | 5.7 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Work | R-Free | Mean Isotropic B | |||||||
X-RAY DIFFRACTION | FOURIER SYNTHESIS | FREE R-VALUE | 2ELG | 1.41 | 22.45 | 3922 | 183 | 77.388 | 0.193 | 0.1918 | 0.2216 | 10.586 |
Temperature Factor Modeling | ||||||
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
-0.045 | 0.021 | 0.024 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_lrange_it | 3.361 |
r_lrange_other | 3.145 |
r_angle_refined_deg | 2.427 |
r_scangle_it | 2.323 |
r_scangle_other | 2.32 |
r_scbond_it | 1.479 |
r_scbond_other | 1.479 |
r_angle_other_deg | 0.513 |
r_nbtor_refined | 0.279 |
r_xyhbond_nbd_refined | 0.25 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | |
Nucleic Acid Atoms | 240 |
Solvent Atoms | 52 |
Heterogen Atoms | 1 |
Software
Software | |
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Software Name | Purpose |
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
FFT | phasing |