7ZQN

d(CGCGCG)2 Z-DNA AT 5400 BARS (540 MPa)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE6.929810 mg in 20 % MPD solution (cacodylate buffer + 0.01 M MgCl2)
Crystal Properties
Matthews coefficientSolvent content
1.6726.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 17.87α = 90
b = 30.9β = 90
c = 43.76γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298CCDADSC QUANTUM 315r2007-06-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30A0.75003ESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4125.177.40.1180.0470.997.85.83922
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.411.4475.10.1890.1790.973.15.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISFREE R-VALUE2ELG1.4122.45392218377.3880.1930.19180.221610.586
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0450.0210.024
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it3.361
r_lrange_other3.145
r_angle_refined_deg2.427
r_scangle_it2.323
r_scangle_other2.32
r_scbond_it1.479
r_scbond_other1.479
r_angle_other_deg0.513
r_nbtor_refined0.279
r_xyhbond_nbd_refined0.25
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it3.361
r_lrange_other3.145
r_angle_refined_deg2.427
r_scangle_it2.323
r_scangle_other2.32
r_scbond_it1.479
r_scbond_other1.479
r_angle_other_deg0.513
r_nbtor_refined0.279
r_xyhbond_nbd_refined0.25
r_symmetry_xyhbond_nbd_refined0.244
r_symmetry_nbd_other0.228
r_chiral_restr0.187
r_nbd_refined0.158
r_nbd_other0.153
r_symmetry_nbd_refined0.095
r_symmetry_nbtor_other0.081
r_gen_planes_refined0.022
r_bond_refined_d0.007
r_bond_other_d0.006
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms240
Solvent Atoms52
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
FFTphasing