Experiment: 7ZOT

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7ZOM

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8.5	293	Morpheus screen condition H12 0.1M Amino acids, 0.1M Tris Bicine pH 8.5 37.5% v/v MPD PEG1000 PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
2.17	43.27

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 116.8	α = 90
b = 39.54	β = 94.952
c = 52.95	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2016-10-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE MASSIF-1	0.966	ESRF	MASSIF-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.735	52.752	94.5	0.055	0.066	0.036	0.998	13.8	3.3		23862			20.6

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.735	1.765			0.48	0.58	0.322	0.781	2.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7ZOM	1.735	52.752	23861	1151	94.518	0.185	0.184	0.18	0.2009	0.2	21.369

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.614		0.689	0.585		-0.089

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.452
r_dihedral_angle_4_deg	21.871
r_dihedral_angle_3_deg	12.28
r_lrange_it	8.639
r_scangle_it	7.37
r_dihedral_angle_1_deg	6.674
r_scbond_it	5.182
r_mcangle_it	4.248
r_mcbond_it	3.14
r_angle_refined_deg	1.508

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.452
r_dihedral_angle_4_deg	21.871
r_dihedral_angle_3_deg	12.28
r_lrange_it	8.639
r_scangle_it	7.37
r_dihedral_angle_1_deg	6.674
r_scbond_it	5.182
r_mcangle_it	4.248
r_mcbond_it	3.14
r_angle_refined_deg	1.508
r_nbtor_refined	0.307
r_nbd_refined	0.203
r_xyhbond_nbd_refined	0.157
r_symmetry_nbd_refined	0.148
r_symmetry_xyhbond_nbd_refined	0.134
r_chiral_restr	0.07
r_bond_refined_d	0.014
r_gen_planes_refined	0.01

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1872
Nucleic Acid Atoms
Solvent Atoms	98
Heterogen Atoms	7

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.