☰ Navigation Tabs
Crystal structure of BRIL and SRP2070_Fab complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M6T 1M6T, 1F58 experimental model PDB 1F58 1M6T, 1F58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277.15 PEG 6000, Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.23 44.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.828 α = 90 b = 75.239 β = 99.67 c = 152.231 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00004 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 48.64 94.9 0.063 0.08 0.049 0.996 10.8 2.3 57858
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 94.7 0.645 0.815 0.49 0.568 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1M6T, 1F58 2.1 42.74 54939 2917 94.56 0.2164 0.2136 0.2205 0.2684 0.2716 RANDOM 53.416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 0.33 0.18 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.962 r_dihedral_angle_3_deg 17.075 r_dihedral_angle_4_deg 14.539 r_dihedral_angle_1_deg 7.413 r_angle_other_deg 2.382 r_angle_refined_deg 1.319 r_chiral_restr 0.052 r_bond_other_d 0.036 r_gen_planes_refined 0.005 r_gen_planes_other 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.962 r_dihedral_angle_3_deg 17.075 r_dihedral_angle_4_deg 14.539 r_dihedral_angle_1_deg 7.413 r_angle_other_deg 2.382 r_angle_refined_deg 1.319 r_chiral_restr 0.052 r_bond_other_d 0.036 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_refined_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8291 Nucleic Acid Atoms Solvent Atoms 665 Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction