☰ Navigation Tabs
Crystal structure of phosphorylated AtMKK5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BF2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 0.1 M Bis-Tris Propane (pH 7.0), 2.8 M NaAc (pH 7.0) and 0.4M NaCl
Crystal Properties Matthews coefficient Solvent content 3.16 61.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.666 α = 90 b = 198.572 β = 90 c = 202.824 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.979 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 96.7 0.167 0.99 15.6 7.5 55113
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.31 97.2 1.697 0.872 1.86 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4BF2 3.2 49.13 52111 2647 96.69 0.211 0.2093 0.2456 0.2374 RANDOM 101.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.03 -4.35 -1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.474 r_mcangle_it 15.998 r_dihedral_angle_4_deg 14.778 r_dihedral_angle_3_deg 14.673 r_mcbond_it 10.921 r_mcbond_other 10.919 r_dihedral_angle_1_deg 7.825 r_angle_refined_deg 1.67 r_angle_other_deg 1.4 r_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.474 r_mcangle_it 15.998 r_dihedral_angle_4_deg 14.778 r_dihedral_angle_3_deg 14.673 r_mcbond_it 10.921 r_mcbond_other 10.919 r_dihedral_angle_1_deg 7.825 r_angle_refined_deg 1.67 r_angle_other_deg 1.4 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16581 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing