X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP291.1520%(v/v) Butanediol, 0.1 M Sodium acetate pH 4.5
Crystal Properties
Matthews coefficientSolvent content
2.8156.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.623α = 90
b = 224.972β = 90
c = 152.371γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2021-07-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL18U10.978SSRFBL18U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1152.3797.90.2120.2290.0860.997.113.4105199
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.141.7571.8960.7060.69913.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3OSU2.197.275105141521297.6720.2020.20010.246942.08
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.947-0.125-2.822
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.152
r_dihedral_angle_4_deg15.64
r_dihedral_angle_3_deg15.588
r_dihedral_angle_1_deg7.228
r_lrange_it7.057
r_lrange_other7.044
r_scangle_it5.708
r_scangle_other5.708
r_mcangle_it4.152
r_mcangle_other4.152
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.152
r_dihedral_angle_4_deg15.64
r_dihedral_angle_3_deg15.588
r_dihedral_angle_1_deg7.228
r_lrange_it7.057
r_lrange_other7.044
r_scangle_it5.708
r_scangle_other5.708
r_mcangle_it4.152
r_mcangle_other4.152
r_dihedral_angle_other_2_deg3.883
r_scbond_other3.775
r_scbond_it3.774
r_mcbond_it2.992
r_mcbond_other2.989
r_angle_refined_deg1.517
r_angle_other_deg1.329
r_nbd_refined0.2
r_symmetry_xyhbond_nbd_refined0.199
r_symmetry_nbd_other0.175
r_nbd_other0.16
r_xyhbond_nbd_refined0.157
r_nbtor_refined0.154
r_xyhbond_nbd_other0.113
r_symmetry_nbd_refined0.105
r_chiral_restr0.073
r_symmetry_nbtor_other0.073
r_symmetry_xyhbond_nbd_other0.063
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11408
Nucleic Acid Atoms
Solvent Atoms511
Heterogen Atoms299

Software

Software
Software NamePurpose
REFMACrefinement
REFMACrefinement
PHENIXphasing