7UGC | pdb_00007ugc

Structure of the N-terminal domain of ViaA

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE II 800
2	2D 1H-13C HSQC aliphatic	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE II 800
3	3D 1H-13C NOESY aliphatic	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE II 800
11	3D 1H-13C NOESY aromatic	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE II 800
4	3D 1H-15N NOESY	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE II 800
5	3D HCCH-TOCSY	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE II 800
9	3D HN(CO)CA	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE III 600
8	3D HNCA	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE III 600
7	3D HNCACB	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE III 600
6	3D CBCA(CO)NH	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE III 600
10	3D HBHA(CO)NH	500 uM [U-100% 13C; U-100% 15N] ViaA-NTD, 50 mM HEPES, 100 mM NaCl, 10 mM beta-mercaptoethanol	95% H2O/5% D2O	100 mM	7.5	1 atm	313	Bruker AVANCE III 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600
2	Bruker	AVANCE II	800

NMR Refinement
Method	Details	Software
molecular dynamics		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger A. T. et.al.
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	FMCGUI		Lemak and Arrowsmith
4	peak picking	NMRFAM-SPARKY		Lee, W., Tonelli, M., and Markley, J.L.