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Room temperature rsEospa Trans-state structure at pH 5.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OQ9 5OQ9, 5OQA experimental model PDB 5OQA 5OQ9, 5OQA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 5.5 293 0.2 M LITHIUM SULFATE 0.1 M TRIS-Cl pH 5.5, 25% PEG 3350, 15 mg/ml PROTEIN CONCENTRATION
Crystal Properties Matthews coefficient Solvent content 2.32 47.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.6 α = 90 b = 74.43 β = 90 c = 78.32 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 289 PIXEL DECTRIS PILATUS3 6M 2020-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9801 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 78.91 100 0.94 4.045 483.78 11732347
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.813 100 0.31 0.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5OQ9, 5OQA 1.75 39.191 24055 1202 99.996 0.202 0.2002 0.2007 0.2425 0.2428 23.088
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.391 0.101 -0.491
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.593 r_dihedral_angle_4_deg 19.854 r_dihedral_angle_3_deg 13.967 r_dihedral_angle_1_deg 7.652 r_lrange_it 6.374 r_lrange_other 6.268 r_scangle_it 4.203 r_scangle_other 4.201 r_mcangle_it 3.156 r_mcangle_other 3.156
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.593 r_dihedral_angle_4_deg 19.854 r_dihedral_angle_3_deg 13.967 r_dihedral_angle_1_deg 7.652 r_lrange_it 6.374 r_lrange_other 6.268 r_scangle_it 4.203 r_scangle_other 4.201 r_mcangle_it 3.156 r_mcangle_other 3.156 r_scbond_it 2.677 r_scbond_other 2.676 r_mcbond_it 1.956 r_mcbond_other 1.921 r_angle_refined_deg 1.641 r_angle_other_deg 1.325 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.186 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.171 r_symmetry_nbd_refined 0.162 r_nbd_other 0.154 r_symmetry_xyhbond_nbd_refined 0.15 r_symmetry_nbtor_other 0.137 r_chiral_restr 0.072 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1748 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling REFMAC phasing