7TSV

Room temperature rsEospa Trans-state structure at pH 5.5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE5.52930.2 M LITHIUM SULFATE 0.1 M TRIS-Cl pH 5.5, 25% PEG 3350, 15 mg/ml PROTEIN CONCENTRATION
Crystal Properties
Matthews coefficientSolvent content
2.3247.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.6α = 90
b = 74.43β = 90
c = 78.32γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray289PIXELDECTRIS PILATUS3 6M2020-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.9801DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7578.911000.944.045483.7811732347
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8131000.310.31

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5OQ9, 5OQA1.7539.19124055120299.9960.2020.20020.242523.088
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.3910.101-0.491
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.593
r_dihedral_angle_4_deg19.854
r_dihedral_angle_3_deg13.967
r_dihedral_angle_1_deg7.652
r_lrange_it6.374
r_lrange_other6.268
r_scangle_it4.203
r_scangle_other4.201
r_mcangle_it3.156
r_mcangle_other3.156
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.593
r_dihedral_angle_4_deg19.854
r_dihedral_angle_3_deg13.967
r_dihedral_angle_1_deg7.652
r_lrange_it6.374
r_lrange_other6.268
r_scangle_it4.203
r_scangle_other4.201
r_mcangle_it3.156
r_mcangle_other3.156
r_scbond_it2.677
r_scbond_other2.676
r_mcbond_it1.956
r_mcbond_other1.921
r_angle_refined_deg1.641
r_angle_other_deg1.325
r_nbd_refined0.231
r_xyhbond_nbd_refined0.186
r_symmetry_nbd_other0.183
r_nbtor_refined0.171
r_symmetry_nbd_refined0.162
r_nbd_other0.154
r_symmetry_xyhbond_nbd_refined0.15
r_symmetry_nbtor_other0.137
r_chiral_restr0.072
r_bond_refined_d0.01
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1748
Nucleic Acid Atoms
Solvent Atoms95
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
CrystFELdata reduction
CrystFELdata scaling
REFMACphasing