7TNB

Caulobacter segnis arene reductase (CSAR) - WT


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.6293Crystal Screen #20: 0.2 M Ammonium sulfate, 0.1 M Sodium acetate trihydrate pH 4.6, 25% w/v Polyethylene glycol 4,000 Protein dissolved in 100 mM KPi, pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.2344.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.47α = 90
b = 104.175β = 90
c = 144.328γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2018-12-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.9201NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7929.6899.80.1470.1590.060.99812.913.333499
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.791.8397.31.391.5130.5890.745

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6MYW1.7929.67833460166399.8270.1550.15310.185918.671
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.4362.188-0.752
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.065
r_dihedral_angle_4_deg17.07
r_dihedral_angle_3_deg13.373
r_dihedral_angle_1_deg7.026
r_lrange_it5.15
r_lrange_other4.959
r_scangle_it4.024
r_scangle_other3.913
r_scbond_it2.867
r_scbond_other2.767
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.065
r_dihedral_angle_4_deg17.07
r_dihedral_angle_3_deg13.373
r_dihedral_angle_1_deg7.026
r_lrange_it5.15
r_lrange_other4.959
r_scangle_it4.024
r_scangle_other3.913
r_scbond_it2.867
r_scbond_other2.767
r_mcangle_it1.797
r_mcangle_other1.797
r_angle_refined_deg1.592
r_angle_other_deg1.464
r_mcbond_it1.34
r_mcbond_other1.313
r_symmetry_xyhbond_nbd_refined0.329
r_symmetry_nbd_refined0.245
r_nbd_refined0.204
r_symmetry_nbd_other0.179
r_nbtor_refined0.168
r_xyhbond_nbd_refined0.168
r_nbd_other0.165
r_chiral_restr0.09
r_symmetry_nbtor_other0.084
r_bond_refined_d0.011
r_gen_planes_refined0.01
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2651
Nucleic Acid Atoms
Solvent Atoms294
Heterogen Atoms82

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing