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Hen egg-white lysozyme with ionic liquid butylammonium nitrate 1 mol%
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7JMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8 298.15 butylammonium nitrate 1 mol% (ca. 7wt%) in water
Crystal Properties Matthews coefficient Solvent content 1.8 31.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.64 α = 90 b = 62.45 β = 90.21 c = 59.78 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95372 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.18 43.18 99.8 0.992 5.4 6.2 67030
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.18 1.2 99.6 0.036 1.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7JMU 1.18 17.09 59883 3100 93.68 0.19908 0.1852 0.22994 0.2229 14.338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 -0.069 -0.359
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.889 r_dihedral_angle_4_deg 19.077 r_dihedral_angle_3_deg 12.747 r_dihedral_angle_1_deg 6.931 r_scangle_it 3.726 r_lrange_it 3.708 r_lrange_other 3.645 r_scangle_other 3.633 r_scbond_it 3.093 r_scbond_other 2.995
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.889 r_dihedral_angle_4_deg 19.077 r_dihedral_angle_3_deg 12.747 r_dihedral_angle_1_deg 6.931 r_scangle_it 3.726 r_lrange_it 3.708 r_lrange_other 3.645 r_scangle_other 3.633 r_scbond_it 3.093 r_scbond_other 2.995 r_rigid_bond_restr 2.932 r_mcangle_other 2.579 r_mcangle_it 2.577 r_mcbond_it 2.196 r_mcbond_other 2.171 r_angle_refined_deg 1.893 r_angle_other_deg 1.657 r_nbd_other 0.239 r_nbd_refined 0.228 r_symmetry_nbd_other 0.196 r_symmetry_xyhbond_nbd_refined 0.193 r_symmetry_nbd_refined 0.176 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.106 r_symmetry_nbtor_other 0.089 r_symmetry_xyhbond_nbd_other 0.061 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2000 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing