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Hen egg-white lysozyme with ionic liquid ethylammonium nitrate 5 mol%
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7JMU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 293.15 ionic liquid ethylammonium nitrate 5 mol% (ca. 24wt%) in water
Crystal Properties Matthews coefficient Solvent content 1.79 31.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.531 α = 90 b = 62.477 β = 90.262 c = 59.648 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95372 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 43.14 99.9 0.999 10.1 3.5 26661
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 100 0.95 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7JMU 1.6 29.841 26111 1352 97.713 0.143 0.1397 0.1389 0.207 0.2071 25.36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.154 -0.706 0.163 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.221 r_dihedral_angle_4_deg 17.256 r_dihedral_angle_3_deg 13.435 r_dihedral_angle_1_deg 7.085 r_lrange_it 5.753 r_scangle_it 5.662 r_rigid_bond_restr 5.457 r_scbond_it 5.347 r_mcangle_it 4.778 r_mcbond_it 3.924
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.221 r_dihedral_angle_4_deg 17.256 r_dihedral_angle_3_deg 13.435 r_dihedral_angle_1_deg 7.085 r_lrange_it 5.753 r_scangle_it 5.662 r_rigid_bond_restr 5.457 r_scbond_it 5.347 r_mcangle_it 4.778 r_mcbond_it 3.924 r_angle_refined_deg 1.866 r_nbtor_refined 0.301 r_nbd_refined 0.208 r_symmetry_nbd_refined 0.193 r_xyhbond_nbd_refined 0.166 r_symmetry_xyhbond_nbd_refined 0.146 r_chiral_restr 0.1 r_bond_refined_d 0.013 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2000 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing