X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930.1 MM TRIS PH 8.0, 20% (W/V) PEG6000, 0.2 M NACL
Crystal Properties
Matthews coefficientSolvent content
2.9958.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.099α = 90
b = 94.724β = 90
c = 129.154γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-03-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.0000SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6976.3899.40.040.0460.99920.323.72983278.605
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.692.9499.60.4420.510.9982.843.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.6976.382907875499.40.21020.20930.2453RANDOM82.451
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.192.40.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.588
r_dihedral_angle_3_deg13.388
r_dihedral_angle_4_deg11.399
r_dihedral_angle_1_deg5.498
r_angle_refined_deg1.229
r_angle_other_deg0.937
r_nbd_refined0.201
r_symmetry_vdw_refined0.193
r_nbtor_refined0.168
r_symmetry_vdw_other0.141
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.588
r_dihedral_angle_3_deg13.388
r_dihedral_angle_4_deg11.399
r_dihedral_angle_1_deg5.498
r_angle_refined_deg1.229
r_angle_other_deg0.937
r_nbd_refined0.201
r_symmetry_vdw_refined0.193
r_nbtor_refined0.168
r_symmetry_vdw_other0.141
r_nbd_other0.139
r_symmetry_hbond_refined0.105
r_xyhbond_nbd_refined0.102
r_nbtor_other0.076
r_chiral_restr0.068
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5953
Nucleic Acid Atoms
Solvent Atoms13
Heterogen Atoms58

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing