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Crystal Structure of the Putative Bacteriophage Protein from Stenotrophomonas maltophilia
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 292 Protein: 8.4mg/ml, 0.15M Sodium chloride, 0.01M Tris pH 8.3;
Screen: PEGs II (F6), 0.2M Ammonium sulfate, 0.1M tri-Sodium citrate pH 5.6, 25% (w/v) PEG 4000.
Crystal Properties Matthews coefficient Solvent content 2.19 43.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.436 α = 90 b = 90.67 β = 103.99 c = 72.067 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M Be 2021-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97848 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 98.9 0.082 0.082 0.09 0.036 0.999 20.1 5.9 51491 -3 34.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 99.6 0.928 0.928 1.022 0.423 0.705 2 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 28.71 48349 2591 98.87 0.1905 0.1884 0.2308 0.2621 RANDOM 44.057
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.16 2.56 -1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.094 r_dihedral_angle_4_deg 10.143 r_dihedral_angle_3_deg 9.147 r_dihedral_angle_1_deg 2.764 r_angle_refined_deg 1.269 r_angle_other_deg 0.333 r_chiral_restr 0.058 r_gen_planes_refined 0.053 r_gen_planes_other 0.046 r_bond_refined_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.094 r_dihedral_angle_4_deg 10.143 r_dihedral_angle_3_deg 9.147 r_dihedral_angle_1_deg 2.764 r_angle_refined_deg 1.269 r_angle_other_deg 0.333 r_chiral_restr 0.058 r_gen_planes_refined 0.053 r_gen_planes_other 0.046 r_bond_refined_d 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4825 Nucleic Acid Atoms Solvent Atoms 310 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing