7QYI

Solution structure of the DNA-binding minor pilin FimT from Legionella pneumophila


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D NOESY combined580 uM [U-13C; U-15N] FimT, 25 mM NaPi, 150 mM sodium chloride90% H2O/10% D2O150 mM NaCl mM7.2AMBIENT Pa298Bruker AVANCE III HD 900
23D HCCH-TOCSY580 uM [U-13C; U-15N] FimT, 25 mM NaPi, 150 mM sodium chloride90% H2O/10% D2O150 mM NaCl mM7.2AMBIENT Pa298Bruker AVANCE III HD 600
33D HNCACB580 uM [U-13C; U-15N] FimT, 25 mM NaPi, 150 mM sodium chloride90% H2O/10% D2O150 mM NaCl mM7.2AMBIENT Pa298Bruker AVANCE NEO 700
43D CBCA(CO)NH580 uM [U-13C; U-15N] FimT, 25 mM NaPi, 150 mM sodium chloride90% H2O/10% D2O150 mM NaCl mM7.2AMBIENT Pa298Bruker AVANCE NEO 700
52D 1H-13C HSQC580 uM [U-13C; U-15N] FimT, 25 mM NaPi, 150 mM sodium chloride90% H2O/10% D2O150 mM NaCl mM7.2AMBIENT Pa298Bruker AVANCE III HD 900
62D 1H-15N HSQC580 uM [U-13C; U-15N] FimT, 25 mM NaPi, 150 mM sodium chloride90% H2O/10% D2O150 mM NaCl mM7.2AMBIENT Pa298Bruker AVANCE III HD 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD900
2BrukerAVANCE III HD600
3BrukerAVANCE NEO700
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCARAKeller and Wuthrich
2peak pickingCcpNmr Analysis2.51CCPN
3structure calculationCYANA3.98.2Guntert, Mumenthaler and Wuthrich
4geometry optimizationAmber20Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
5collectionTopSpin4.07Bruker Biospin