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Fructose-6-phosphate aldolase (FSA) mutant R134V, S166G, with covalently bound active site ligand
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L6W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.2-1.6 M ammonium sulfate, 50-150 mM NaCl, 100 mM Tris or Bicine pH 8.5-8.75
Crystal Properties Matthews coefficient Solvent content 2.69 54.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.198 α = 90 b = 176.865 β = 91.5 c = 120.093 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.07227 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.62 49.7 99.1 0.121 0.144 0.077 0.993 7.2 3.4 112831 64.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.62 2.71 96.8 0.866 0.575 0.65 1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1l6w 2.62 49.71 107028 5735 98.99 0.2216 0.2195 0.2621 0.2367 RANDOM 58.979
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.05 5.51 -5.19 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.002 r_dihedral_angle_3_deg 17.545 r_dihedral_angle_4_deg 6.523 r_dihedral_angle_1_deg 6.378 r_angle_refined_deg 1.529 r_angle_other_deg 1.223 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.002 r_dihedral_angle_3_deg 17.545 r_dihedral_angle_4_deg 6.523 r_dihedral_angle_1_deg 6.378 r_angle_refined_deg 1.529 r_angle_other_deg 1.223 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 24273 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 9291
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing