7QW3

R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera in complex with Br ion.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1M Tris-HBr, pH 7.4, 1.3M ammonium dihydrogen phosphate
Crystal Properties
Matthews coefficientSolvent content
3.2662.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 182.484α = 90
b = 182.484β = 90
c = 177.592γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2002-12-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7A0.9763EMBL/DESY, HAMBURGBW7A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7829.996970.0480.99313.22.5309584
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.810.3970.69

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1up81.7829.9963093941561396.8710.1440.14280.171319.869
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.2620.1310.262-0.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.661
r_dihedral_angle_4_deg16.913
r_dihedral_angle_3_deg12.749
r_lrange_it6.606
r_dihedral_angle_1_deg5.9
r_scangle_it5.723
r_scbond_it4.938
r_mcangle_it3.545
r_mcbond_it2.983
r_angle_refined_deg1.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.661
r_dihedral_angle_4_deg16.913
r_dihedral_angle_3_deg12.749
r_lrange_it6.606
r_dihedral_angle_1_deg5.9
r_scangle_it5.723
r_scbond_it4.938
r_mcangle_it3.545
r_mcbond_it2.983
r_angle_refined_deg1.54
r_nbtor_refined0.321
r_symmetry_nbd_refined0.225
r_nbd_refined0.212
r_symmetry_xyhbond_nbd_refined0.18
r_xyhbond_nbd_refined0.15
r_chiral_restr0.101
r_metal_ion_refined0.098
r_ncsr_local_group_20.063
r_ncsr_local_group_60.062
r_ncsr_local_group_40.061
r_ncsr_local_group_10.059
r_ncsr_local_group_30.057
r_ncsr_local_group_50.057
r_bond_refined_d0.011
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18440
Nucleic Acid Atoms
Solvent Atoms3697
Heterogen Atoms304

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
Omodel building
Cootmodel building
MOLREPphasing