☰ Navigation Tabs
Methylmannose polysaccharide mannosyltransferase from M. hassiacum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4N9W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.1 M Na-HEPES pH 7.5, 0.2 M sodium acetate, 25% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.65 53.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.261 α = 90 b = 77.4 β = 106.49 c = 101.21 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 1.03320 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 66.59 99.62 0.03388 0.04792 0.03388 0.999 9.97 1.9 26401 85.47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.848 0.5767 0.8156 0.5767 0.649 1.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4N9W 2.75 66.59 1.34 26368 1325 99.63 0.2702 0.2694 0.2707 0.2867 0.2867 102.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 10.4404 f_angle_d 0.4677 f_chiral_restr 0.0405 f_plane_restr 0.0044 f_bond_d 0.0019
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4801 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose iMOSFLM data reduction PHENIX refinement Aimless data scaling Coot model building PHASER phasing