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Crystal structure of untagged rat C2orf32 (also known as CNRIP1) in a domain-swapped conformation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 5-10% PEG1500, SPG buffer pH 6.0-6.5, 5-10mM DTT
Crystal Properties Matthews coefficient Solvent content 2.03 39.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.25 α = 90 b = 79.6 β = 90 c = 130.54 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.83000 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 39.8 99.2 0.077 0.081 0.024 0.999 23 11.2 18699 14.54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 90.7 0.811 0.878 0.325 0.676 2.2 6.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 1.651 39.8 18665 942 99.008 0.17 0.1677 0.179 0.218 0.221 19.047
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.346 1.233 -0.887
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.288 r_dihedral_angle_4_deg 17.238 r_dihedral_angle_3_deg 13.852 r_dihedral_angle_1_deg 7.473 r_lrange_it 5.411 r_lrange_other 5.41 r_scangle_it 3.323 r_scangle_other 3.322 r_mcangle_other 2.621 r_mcangle_it 2.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.288 r_dihedral_angle_4_deg 17.238 r_dihedral_angle_3_deg 13.852 r_dihedral_angle_1_deg 7.473 r_lrange_it 5.411 r_lrange_other 5.41 r_scangle_it 3.323 r_scangle_other 3.322 r_mcangle_other 2.621 r_mcangle_it 2.62 r_scbond_it 2.149 r_scbond_other 2.147 r_mcbond_it 1.729 r_mcbond_other 1.725 r_angle_refined_deg 1.661 r_angle_other_deg 1.369 r_symmetry_nbd_refined 0.283 r_xyhbond_nbd_refined 0.22 r_nbd_refined 0.197 r_symmetry_nbd_other 0.196 r_nbtor_refined 0.168 r_nbd_other 0.167 r_symmetry_xyhbond_nbd_refined 0.155 r_metal_ion_refined 0.1 r_symmetry_metal_ion_refined 0.1 r_chiral_restr 0.083 r_symmetry_nbtor_other 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1251 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHENIX phasing