7PWX

dUTPase from M. tuberculosis in complex with Stl

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		294	20% PEG 10.000 and 0.1 M Na-Hepes pH7.5

Crystal Properties
Matthews coefficient	Solvent content
3.51	64.98

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.407	α = 90
b = 150.429	β = 98.85
c = 107.37	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	80	PIXEL	DECTRIS PILATUS 6M		2019-02-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97918	ALBA	XALOC

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.75	75.33	95.07	0.976	8.3	4.4		61491

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.75	2.821			0.586

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	SAD	FREE R-VALUE	2.75	75.328	61491	3102	95.069	0.204	0.20371	0.20069	0.25875	56.503

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.3		-3.356	1.149		-0.385

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.003
r_dihedral_angle_3_deg	19.26
r_dihedral_angle_4_deg	19.24
r_lrange_it	8.98
r_lrange_other	8.98
r_dihedral_angle_1_deg	6.982
r_mcangle_it	6.42
r_mcangle_other	6.42
r_scangle_it	6.181
r_scangle_other	6.18
r_mcbond_it	4.139
r_mcbond_other	4.139
r_scbond_it	3.959
r_scbond_other	3.959
r_angle_other_deg	2.418
r_angle_refined_deg	1.46
r_symmetry_nbd_other	0.223
r_nbd_refined	0.205
r_nbd_other	0.197
r_nbtor_refined	0.164
r_xyhbond_nbd_refined	0.157
r_symmetry_nbd_refined	0.133
r_symmetry_nbtor_other	0.074
r_symmetry_xyhbond_nbd_other	0.066
r_chiral_restr	0.057
r_symmetry_xyhbond_nbd_refined	0.056
r_bond_other_d	0.036
r_gen_planes_other	0.008
r_bond_refined_d	0.006
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	12091
Nucleic Acid Atoms
Solvent Atoms	108
Heterogen Atoms	92

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing