7PI4

FAK Protac GSK215 in complex with FAK and pVHL:ElonginC:ElonginB


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930.05M CaCl, 0.1M MES pH 6.5, 45%v/v, PEG200
Crystal Properties
Matthews coefficientSolvent content
2.8757.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.55α = 90
b = 77.26β = 90
c = 175.18γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 16M2018-06-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U10.97918SSRFBL17U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2458.3999.90.1980.9846.26.739778
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.242.399.90.9780.7792.26.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3PSK2.2456.38139716196399.8820.1980.19530.251253.214
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0150.763-0.748
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.389
r_dihedral_angle_4_deg20.415
r_dihedral_angle_3_deg15.961
r_lrange_other12.057
r_lrange_it12.049
r_scangle_it10.181
r_scangle_other10.179
r_mcangle_it8.133
r_mcangle_other8.133
r_scbond_it7.079
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.389
r_dihedral_angle_4_deg20.415
r_dihedral_angle_3_deg15.961
r_lrange_other12.057
r_lrange_it12.049
r_scangle_it10.181
r_scangle_other10.179
r_mcangle_it8.133
r_mcangle_other8.133
r_scbond_it7.079
r_dihedral_angle_1_deg7.078
r_scbond_other7.077
r_mcbond_it5.86
r_mcbond_other5.859
r_angle_refined_deg1.431
r_angle_other_deg1.194
r_nbd_refined0.194
r_nbd_other0.194
r_symmetry_nbd_other0.186
r_symmetry_nbd_refined0.174
r_xyhbond_nbd_refined0.167
r_nbtor_refined0.164
r_metal_ion_refined0.128
r_symmetry_xyhbond_nbd_other0.125
r_symmetry_xyhbond_nbd_refined0.119
r_symmetry_nbtor_other0.086
r_chiral_restr0.062
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4929
Nucleic Acid Atoms
Solvent Atoms150
Heterogen Atoms155

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling