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FAK Protac GSK215 in complex with FAK and pVHL:ElonginC:ElonginB
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PSK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.05M CaCl, 0.1M MES pH 6.5, 45%v/v, PEG200
Crystal Properties Matthews coefficient Solvent content 2.87 57.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.55 α = 90 b = 77.26 β = 90 c = 175.18 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2018-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97918 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 58.39 99.9 0.198 0.984 6.2 6.7 39778
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.24 2.3 99.9 0.978 0.779 2.2 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3PSK 2.24 56.381 39716 1963 99.882 0.198 0.1953 0.1989 0.2512 0.2502 53.214
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.015 0.763 -0.748
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.389 r_dihedral_angle_4_deg 20.415 r_dihedral_angle_3_deg 15.961 r_lrange_other 12.057 r_lrange_it 12.049 r_scangle_it 10.181 r_scangle_other 10.179 r_mcangle_it 8.133 r_mcangle_other 8.133 r_scbond_it 7.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.389 r_dihedral_angle_4_deg 20.415 r_dihedral_angle_3_deg 15.961 r_lrange_other 12.057 r_lrange_it 12.049 r_scangle_it 10.181 r_scangle_other 10.179 r_mcangle_it 8.133 r_mcangle_other 8.133 r_scbond_it 7.079 r_dihedral_angle_1_deg 7.078 r_scbond_other 7.077 r_mcbond_it 5.86 r_mcbond_other 5.859 r_angle_refined_deg 1.431 r_angle_other_deg 1.194 r_nbd_refined 0.194 r_nbd_other 0.194 r_symmetry_nbd_other 0.186 r_symmetry_nbd_refined 0.174 r_xyhbond_nbd_refined 0.167 r_nbtor_refined 0.164 r_metal_ion_refined 0.128 r_symmetry_xyhbond_nbd_other 0.125 r_symmetry_xyhbond_nbd_refined 0.119 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.062 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4929 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 155
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling