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X-ray structure of CypA-C52AK125C/CsA/aromatic foldamer complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ESL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.4 293 Tris 0.1M, PEG 3350 15%, NaN3 3mM
Crystal Properties Matthews coefficient Solvent content 2.69 54.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.474 α = 90 b = 70.891 β = 102.7 c = 64.09 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2019-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.9801 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 62.52 100 0.191 0.196 0.044 0.997 10.9 19.7 28858
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 1.206 1.244 0.3 0.818 16.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2ESL 1.91 62.52 24452 1272 89.09 0.1793 0.1771 0.2194 0.2417 RANDOM 37.155
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.64 0.94 -1.19 2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.879 r_dihedral_angle_3_deg 14.375 r_dihedral_angle_4_deg 12.04 r_dihedral_angle_1_deg 8.166 r_angle_refined_deg 1.568 r_angle_other_deg 1.255 r_chiral_restr 0.067 r_gen_planes_refined 0.013 r_bond_refined_d 0.01 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.879 r_dihedral_angle_3_deg 14.375 r_dihedral_angle_4_deg 12.04 r_dihedral_angle_1_deg 8.166 r_angle_refined_deg 1.568 r_angle_other_deg 1.255 r_chiral_restr 0.067 r_gen_planes_refined 0.013 r_bond_refined_d 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2667 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 216
Software Software Software Name Purpose XDS data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction