X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293.15150 mM MgCl2, 100 mM Bis-Tris pH 6.5 and 25% PEG 3350.
Crystal Properties
Matthews coefficientSolvent content
2.3748.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.17α = 90
b = 106.02β = 101.7
c = 55.54γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2019-12-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.9686DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3354.3997.10.9969.73.3128510
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.331.3594.70.4111.43.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2FRS1.3354.386128470650396.8880.1610.15840.199625.357
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.5991.37-3.617-0.506
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.942
r_dihedral_angle_3_deg12.808
r_dihedral_angle_4_deg11.026
r_rigid_bond_restr8.602
r_dihedral_angle_1_deg7.925
r_scangle_it4.997
r_scangle_other4.985
r_lrange_it4.598
r_lrange_other4.524
r_scbond_it4.135
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.942
r_dihedral_angle_3_deg12.808
r_dihedral_angle_4_deg11.026
r_rigid_bond_restr8.602
r_dihedral_angle_1_deg7.925
r_scangle_it4.997
r_scangle_other4.985
r_lrange_it4.598
r_lrange_other4.524
r_scbond_it4.135
r_scbond_other4.107
r_mcangle_other3.236
r_mcangle_it3.218
r_mcbond_it2.699
r_mcbond_other2.557
r_angle_refined_deg1.859
r_angle_other_deg1.587
r_metal_ion_refined0.339
r_nbd_refined0.195
r_symmetry_nbd_other0.192
r_symmetry_xyhbond_nbd_refined0.168
r_nbtor_refined0.156
r_nbd_other0.141
r_xyhbond_nbd_refined0.134
r_chiral_restr0.118
r_symmetry_nbd_refined0.113
r_ncsr_local_group_50.113
r_ncsr_local_group_30.111
r_ncsr_local_group_40.108
r_ncsr_local_group_20.104
r_ncsr_local_group_60.099
r_ncsr_local_group_10.079
r_symmetry_nbtor_other0.076
r_symmetry_xyhbond_nbd_other0.036
r_bond_refined_d0.015
r_bond_other_d0.012
r_gen_planes_refined0.01
r_gen_planes_other0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4333
Nucleic Acid Atoms
Solvent Atoms399
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
XDSdata reduction
Aimlessdata scaling
PHASERphasing
Cootmodel building
MolProbitymodel building